J4_2J28_002

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2J28_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1257

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

2J28|1|B|G|297
2J28|1|B|G|298
2J28|1|B|A|299
2J28|1|B|A|300
2J28|1|B|G|301
*
2J28|1|B|C|316
2J28|1|B|G|317
2J28|1|B|C|318
2J28|1|B|G|319
*
2J28|1|B|C|323
2J28|1|B|A|324
2J28|1|B|G|325
*
2J28|1|B|C|337
2J28|1|B|G|338
2J28|1|B|U|339
2J28|1|B|A|340
2J28|1|B|C|341

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain U

50S RIBOSOMAL PROTEIN L24