J4_2J28_003
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 2J28|1|B|U|653, 2J28|1|B|A|654
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2J28_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.358
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
2J28|1|B|C|601
2J28|1|B|A|602
2J28|1|B|A|603
2J28|1|B|G|604
*
2J28|1|B|C|624
2J28|1|B|G|625
2J28|1|B|A|626
2J28|1|B|A|627
2J28|1|B|G|628
*
2J28|1|B|C|635
2J28|1|B|G|636
2J28|1|B|A|637
2J28|1|B|G|638
*
2J28|1|B|C|650
2J28|1|B|G|651
2J28|1|B|U|652
2J28|1|B|U|653
2J28|1|B|A|654
2J28|1|B|A|655
2J28|1|B|G|656
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain E
- 50S RIBOSOMAL PROTEIN L4
- Chain L
- 50S RIBOSOMAL PROTEIN L15
Coloring options: