J4_2J28_005

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

2J28|1|B|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2J28_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0913

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

2J28|1|B|G|1310
2J28|1|B|G|1311
2J28|1|B|U|1312
2J28|1|B|U|1313
2J28|1|B|C|1314
*
2J28|1|B|G|1338
2J28|1|B|G|1339
2J28|1|B|U|1340
2J28|1|B|G|1341
2J28|1|B|A|1342
2J28|1|B|G|1343
*
2J28|1|B|C|1404
2J28|1|B|U|1405
*
2J28|1|B|A|1597
2J28|1|B|A|1598
2J28|1|B|U|1599
2J28|1|B|C|1600
2J28|1|B|G|1601
2J28|1|B|U|1602
2J28|1|B|A|1603
2J28|1|B|C|1604

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain T

50S RIBOSOMAL PROTEIN L23

Chain X

50S RIBOSOMAL PROTEIN L29