J4_2J28_009

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

2J28|1|B|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2J28_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1165

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

2J28|1|B|C|1833
2J28|1|B|U|1834
2J28|1|B|G|1835
*
2J28|1|B|C|1905
2J28|1|B|G|1906
*
2J28|1|B|C|1924
2J28|1|B|C|1925
2J28|1|B|U|1926
2J28|1|B|A|1927
2J28|1|B|A|1928
2J28|1|B|G|1929
2J28|1|B|G|1930
2J28|1|B|U|1931
2J28|1|B|A|1932
2J28|1|B|G|1933
*
2J28|1|B|C|1967
2J28|1|B|G|1968
2J28|1|B|A|1969
2J28|1|B|A|1970
2J28|1|B|U|1971
2J28|1|B|G|1972

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2