J4_2K4C_001

3D structure

PDB id

2K4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data

Experimental method

SOLUTION NMR, SOLUTION SCATTERING

Resolution

Loop

Sequence

UUAG*CAC*GGGGUCG*CA

Length

16 nucleotides

Bulged bases

2K4C|1|A|U|8, 2K4C|1|A|U|47, 2K4C|1|A|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2K4C_001 not in the Motif Atlas

Homologous match to J4_4V9Q_031

Geometric discrepancy: 0.3816

The information below is about J4_4V9Q_031

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

2K4C|1|A|U|7
2K4C|1|A|U|8
2K4C|1|A|A|9
2K4C|1|A|G|10
*
2K4C|1|A|C|25
2K4C|1|A|A|26
2K4C|1|A|C|27
*
2K4C|1|A|G|43
2K4C|1|A|G|44
2K4C|1|A|G|45
2K4C|1|A|G|46
2K4C|1|A|U|47
2K4C|1|A|C|48
2K4C|1|A|G|49
*
2K4C|1|A|C|65
2K4C|1|A|A|66

Current chains

Chain A

76-MER

Nearby chains