J4_2O44_003

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

2O44|1|A|G|1284, 2O44|1|A|A|1285, 2O44|1|A|U|1286, 2O44|1|A|A|1287, 2O44|1|A|C|1663, 2O44|1|A|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2O44_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1033

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

2O44|1|A|C|1283
2O44|1|A|G|1284
2O44|1|A|A|1285
2O44|1|A|U|1286
2O44|1|A|A|1287
2O44|1|A|A|1288
2O44|1|A|A|1289
*
2O44|1|A|U|1307
2O44|1|A|C|1308
*
2O44|1|A|G|1662
2O44|1|A|C|1663
2O44|1|A|G|1664
2O44|1|A|C|1665
*
2O44|1|A|G|1992
2O44|1|A|G|1993

Current chains

Chain A

23S rRNA

Nearby chains