J4_2O44_007

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2O44_007 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1078

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

2O44|1|A|G|2622
2O44|1|A|A|2623
2O44|1|A|G|2624
2O44|1|A|U|2625
*
2O44|1|A|A|2653
2O44|1|A|A|2654
2O44|1|A|C|2655
*
2O44|1|A|G|2711
2O44|1|A|G|2712
2O44|1|A|A|2713
2O44|1|A|A|2714
2O44|1|A|C|2715
2O44|1|A|G|2716
*
2O44|1|A|C|2748
2O44|1|A|A|2749
2O44|1|A|G|2750
2O44|1|A|C|2751

Current chains

Chain A

23S rRNA

Nearby chains