J4_2O45_010

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

2O45|1|A|U|350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2O45_010 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.2213

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

2O45|1|A|C|308
2O45|1|A|G|309
2O45|1|A|A|310
2O45|1|A|A|311
2O45|1|A|G|312
*
2O45|1|A|C|327
2O45|1|A|A|328
2O45|1|A|C|329
2O45|1|A|C|330
*
2O45|1|A|G|334
2O45|1|A|A|335
2O45|1|A|A|336
*
2O45|1|A|U|348
2O45|1|A|G|349
2O45|1|A|U|350
2O45|1|A|A|351
2O45|1|A|G|352

Current chains

Chain A

23S rRNA

Nearby chains