J4_2O45_016

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

2O45|1|A|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2O45_016 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.2207

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

2O45|1|A|G|2622
2O45|1|A|A|2623
2O45|1|A|G|2624
2O45|1|A|U|2625
*
2O45|1|A|A|2653
2O45|1|A|A|2654
2O45|1|A|C|2655
*
2O45|1|A|G|2711
2O45|1|A|G|2712
2O45|1|A|A|2713
2O45|1|A|A|2714
2O45|1|A|C|2715
2O45|1|A|G|2716
*
2O45|1|A|C|2748
2O45|1|A|A|2749
2O45|1|A|G|2750
2O45|1|A|C|2751

Current chains

Chain A

23S rRNA

Nearby chains