J4_2OGO_006

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

2OGO|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OGO_006 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.4882

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|C|1825
2OGO|1|0|U|1826
2OGO|1|0|G|1827
*
2OGO|1|0|C|1888
2OGO|1|0|G|1889
*
2OGO|1|0|C|1907
2OGO|1|0|C|1908
2OGO|1|0|U|1909
2OGO|1|0|A|1910
2OGO|1|0|A|1911
2OGO|1|0|G|1912
2OGO|1|0|G|1913
2OGO|1|0|U|1914
2OGO|1|0|A|1915
2OGO|1|0|G|1916
*
2OGO|1|0|C|1950
2OGO|1|0|G|1951
2OGO|1|0|A|1952
2OGO|1|0|A|1953
2OGO|1|0|A|1954
2OGO|1|0|G|1955

Current chains

Chain 0

23S ribosomal RNA

Nearby chains