J4_2OGO_010

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

2OGO|1|0|G|1324, 2OGO|1|0|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OGO_010 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.2833

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

2OGO|1|0|G|1323
2OGO|1|0|G|1324
2OGO|1|0|U|1325
2OGO|1|0|U|1326
2OGO|1|0|C|1327
*
2OGO|1|0|G|1351
2OGO|1|0|G|1352
2OGO|1|0|A|1353
2OGO|1|0|A|1354
2OGO|1|0|A|1355
2OGO|1|0|G|1356
*
2OGO|1|0|C|1417
2OGO|1|0|C|1418
*
2OGO|1|0|G|1613
2OGO|1|0|C|1614
2OGO|1|0|C|1615
2OGO|1|0|C|1616
2OGO|1|0|G|1617
2OGO|1|0|U|1618
2OGO|1|0|A|1619
2OGO|1|0|C|1620

Current chains

Chain 0

23S ribosomal RNA

Nearby chains