J4_2OGO_011

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AUG*UUGGUACGCUCAAG*CUCAGACGUAUCGGGAG*CGAAGU

Length

40 nucleotides

Bulged bases

2OGO|1|0|U|1459, 2OGO|1|0|C|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|A|1458
2OGO|1|0|U|1459
2OGO|1|0|G|1460
*
2OGO|1|0|U|1481
2OGO|1|0|U|1482
2OGO|1|0|G|1483
2OGO|1|0|G|1484
2OGO|1|0|U|1485
2OGO|1|0|A|1486
2OGO|1|0|C|1487
2OGO|1|0|G|1488
2OGO|1|0|C|1489
2OGO|1|0|U|1490
2OGO|1|0|C|1491
2OGO|1|0|A|1492
2OGO|1|0|A|1493
2OGO|1|0|G|1494
*
2OGO|1|0|C|1529
2OGO|1|0|U|1530
2OGO|1|0|C|1531
2OGO|1|0|A|1532
2OGO|1|0|G|1533
2OGO|1|0|A|1534
2OGO|1|0|C|1535
2OGO|1|0|G|1536
2OGO|1|0|U|1537
2OGO|1|0|A|1538
2OGO|1|0|U|1539
2OGO|1|0|C|1540
2OGO|1|0|G|1541
2OGO|1|0|G|1542
2OGO|1|0|G|1543
2OGO|1|0|A|1544
2OGO|1|0|G|1545
*
2OGO|1|0|C|1558
2OGO|1|0|G|1559
2OGO|1|0|A|1560
2OGO|1|0|A|1561
2OGO|1|0|G|1562
2OGO|1|0|U|1563

Current chains

Chain 0

23S ribosomal RNA

Nearby chains