J4_2OTJ_001

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

2OTJ|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OTJ_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0352

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

2OTJ|1|0|C|239
2OTJ|1|0|C|240
*
2OTJ|1|0|G|379
2OTJ|1|0|A|380
2OTJ|1|0|G|381
2OTJ|1|0|U|382
2OTJ|1|0|A|383
2OTJ|1|0|G|384
*
2OTJ|1|0|C|405
2OTJ|1|0|G|406
2OTJ|1|0|A|407
2OTJ|1|0|A|408
2OTJ|1|0|U|409
2OTJ|1|0|A|410
2OTJ|1|0|A|411
2OTJ|1|0|C|412
*
2OTJ|1|0|G|428
2OTJ|1|0|A|429
2OTJ|1|0|A|430
2OTJ|1|0|G|431

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e