J4_2OTJ_005
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UC*GGUUAG*CC*GUCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 2OTJ|1|0|U|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2OTJ_005 not in the Motif Atlas
- Homologous match to J4_4V9F_005
- Geometric discrepancy: 0.032
- The information below is about J4_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
2OTJ|1|0|U|1419
2OTJ|1|0|C|1420
*
2OTJ|1|0|G|1444
2OTJ|1|0|G|1445
2OTJ|1|0|U|1446
2OTJ|1|0|U|1447
2OTJ|1|0|A|1448
2OTJ|1|0|G|1449
*
2OTJ|1|0|C|1513
2OTJ|1|0|C|1514
*
2OTJ|1|0|G|1672
2OTJ|1|0|U|1673
2OTJ|1|0|C|1674
2OTJ|1|0|C|1675
2OTJ|1|0|G|1676
2OTJ|1|0|U|1677
2OTJ|1|0|A|1678
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L39e
- Chain P
- 50S ribosomal protein L19e
- Chain S
- 50S ribosomal protein L23P
- Chain V
- 50S ribosomal protein L29P
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