J4_2OTJ_008

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

2OTJ|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OTJ_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0391

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

2OTJ|1|0|C|1889
2OTJ|1|0|U|1890
2OTJ|1|0|G|1891
*
2OTJ|1|0|C|1946
2OTJ|1|0|G|1947
*
2OTJ|1|0|C|1965
2OTJ|1|0|U|1966
2OTJ|1|0|U|1967
2OTJ|1|0|A|1968
2OTJ|1|0|A|1969
2OTJ|1|0|G|1970
2OTJ|1|0|G|1971
2OTJ|1|0|U|1972
2OTJ|1|0|A|1973
2OTJ|1|0|G|1974
*
2OTJ|1|0|U|2008
2OTJ|1|0|G|2009
2OTJ|1|0|A|2010
2OTJ|1|0|A|2011
2OTJ|1|0|U|2012
2OTJ|1|0|G|2013

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P