J4_2OTL_001

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

2OTL|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OTL_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0382

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

2OTL|1|0|C|239
2OTL|1|0|C|240
*
2OTL|1|0|G|379
2OTL|1|0|A|380
2OTL|1|0|G|381
2OTL|1|0|U|382
2OTL|1|0|A|383
2OTL|1|0|G|384
*
2OTL|1|0|C|405
2OTL|1|0|G|406
2OTL|1|0|A|407
2OTL|1|0|A|408
2OTL|1|0|U|409
2OTL|1|0|A|410
2OTL|1|0|A|411
2OTL|1|0|C|412
*
2OTL|1|0|G|428
2OTL|1|0|A|429
2OTL|1|0|A|430
2OTL|1|0|G|431

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e