J4_2OTL_008

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

2OTL|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OTL_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0489

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

2OTL|1|0|C|1889
2OTL|1|0|U|1890
2OTL|1|0|G|1891
*
2OTL|1|0|C|1946
2OTL|1|0|G|1947
*
2OTL|1|0|C|1965
2OTL|1|0|U|1966
2OTL|1|0|U|1967
2OTL|1|0|A|1968
2OTL|1|0|A|1969
2OTL|1|0|G|1970
2OTL|1|0|G|1971
2OTL|1|0|U|1972
2OTL|1|0|A|1973
2OTL|1|0|G|1974
*
2OTL|1|0|U|2008
2OTL|1|0|G|2009
2OTL|1|0|A|2010
2OTL|1|0|A|2011
2OTL|1|0|U|2012
2OTL|1|0|G|2013

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P