J4_2QA4_010

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

2QA4|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2QA4_010 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0902

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

2QA4|1|0|C|1889
2QA4|1|0|U|1890
2QA4|1|0|G|1891
*
2QA4|1|0|C|1946
2QA4|1|0|G|1947
*
2QA4|1|0|C|1965
2QA4|1|0|U|1966
2QA4|1|0|U|1967
2QA4|1|0|A|1968
2QA4|1|0|A|1969
2QA4|1|0|G|1970
2QA4|1|0|G|1971
2QA4|1|0|U|1972
2QA4|1|0|A|1973
2QA4|1|0|G|1974
*
2QA4|1|0|U|2008
2QA4|1|0|G|2009
2QA4|1|0|A|2010
2QA4|1|0|A|2011
2QA4|1|0|U|2012
2QA4|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P