J4_2QEX_001

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

2QEX|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2QEX_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0507

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

2QEX|1|0|C|239
2QEX|1|0|C|240
*
2QEX|1|0|G|379
2QEX|1|0|A|380
2QEX|1|0|G|381
2QEX|1|0|U|382
2QEX|1|0|A|383
2QEX|1|0|G|384
*
2QEX|1|0|C|405
2QEX|1|0|G|406
2QEX|1|0|A|407
2QEX|1|0|A|408
2QEX|1|0|U|409
2QEX|1|0|A|410
2QEX|1|0|A|411
2QEX|1|0|C|412
*
2QEX|1|0|G|428
2QEX|1|0|A|429
2QEX|1|0|A|430
2QEX|1|0|G|431

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e