J4_2RD2_001
3D structure
- PDB id
- 2RD2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- AUCG*CAC*GCAUUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 2RD2|1|B|U|908, 2RD2|1|B|U|946, 2RD2|1|B|U|947, 2RD2|1|B|C|948
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2RD2_001 not in the Motif Atlas
- Homologous match to J4_1QTQ_001
- Geometric discrepancy: 0.2019
- The information below is about J4_1QTQ_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.3
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
2RD2|1|B|A|907
2RD2|1|B|U|908
2RD2|1|B|C|909
2RD2|1|B|G|910
*
2RD2|1|B|C|925
2RD2|1|B|A|926
2RD2|1|B|C|927
*
2RD2|1|B|G|943
2RD2|1|B|C|944
2RD2|1|B|A|945
2RD2|1|B|U|946
2RD2|1|B|U|947
2RD2|1|B|C|948
2RD2|1|B|C|949
*
2RD2|1|B|G|965
2RD2|1|B|U|966
Current chains
- Chain B
- Glutamine tRNA
Nearby chains
- Chain A
- Glutaminyl-tRNA synthetase
Coloring options: