3D structure

PDB id
2UXD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
2UXD|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_2UXD_003 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.0478
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

2UXD|1|A|G|575
2UXD|1|A|G|576
2UXD|1|A|G|577
*
2UXD|1|A|C|764
2UXD|1|A|G|765
2UXD|1|A|A|766
2UXD|1|A|A|767
2UXD|1|A|A|768
2UXD|1|A|G|769
*
2UXD|1|A|C|810
2UXD|1|A|C|811
2UXD|1|A|C|812
2UXD|1|A|U|813
2UXD|1|A|A|814
2UXD|1|A|A|815
2UXD|1|A|A|816
2UXD|1|A|C|817
2UXD|1|A|G|818
2UXD|1|A|A|819
2UXD|1|A|U|820
2UXD|1|A|G|821
*
2UXD|1|A|C|879
2UXD|1|A|C|880

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
RIBOSOMAL PROTEIN S7
Chain H
RIBOSOMAL PROTEIN S8
Chain L
RIBOSOMAL PROTEIN S12
Chain O
RIBOSOMAL PROTEIN S15
Chain Q
RIBOSOMAL PROTEIN S17

Coloring options:


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