J4_2YGH_001
3D structure
- PDB id
- 2YGH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAGAG*CG*CAAUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 2YGH|1|A|A|9, 2YGH|1|A|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- SAM-I riboswitch
- Broad Annotation
- No text annotation
- Motif group
- J4_40439.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
2YGH|1|A|C|8
2YGH|1|A|A|9
2YGH|1|A|A|10
2YGH|1|A|G|11
2YGH|1|A|A|12
2YGH|1|A|G|13
*
2YGH|1|A|C|41
2YGH|1|A|G|42
*
2YGH|1|A|C|60
2YGH|1|A|A|61
2YGH|1|A|A|62
2YGH|1|A|U|63
2YGH|1|A|U|64
*
2YGH|1|A|A|85
2YGH|1|A|G|86
Current chains
- Chain A
- SAM-I RIBOSWITCH
Nearby chains
No other chains within 10ÅColoring options: