Motif J4_40439.1 Version J4_40439.1 of this group appears in releases 3.2 to 3.45
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 5-6 | 7-8 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4AOB_001 | 4AOB | 0.1790 | 2 | SAM-I riboswitch junction | A | SAM-I riboswitch | C | 8 | A | 10 | G | 11 | A | 12 | G | 13 | * | C | 41 | G | 42 | * | C | 60 | A | 61 | A | 62 | U | 64 | * | A | 85 | G | 86 | cWW | cWW | cWW | cWW |
| 2 | J4_2YGH_001 | 2YGH | 0.0000 | 2 | SAM-I riboswitch junction | A | SAM-I riboswitch | C | 8 | A | 10 | G | 11 | A | 12 | G | 13 | * | C | 41 | G | 42 | * | C | 60 | A | 61 | A | 62 | U | 64 | * | A | 85 | G | 86 | cWW | cWW | cWW | cWW |
| 3 | J4_5FJC_001 | 5FJC | 0.2338 | 2 | SAM-I riboswitch junction | A | SAM-I riboswitch | C | 8 | A | 10 | G | 11 | A | 12 | G | 13 | * | C | 41 | G | 42 | * | C | 60 | A | 61 | A | 62 | U | 64 | * | A | 85 | G | 86 | cWW | cWW | cWW | cWW |
| 4 | J4_4KQY_001 | 4KQY | 0.2687 | 2 | SAM-I riboswitch junction | A | SAM-I riboswitch | C | 8 | A | 10 | G | 11 | A | 12 | G | 13 | * | C | 42 | A | 43 | * | U | 81 | A | 82 | A | 83 | U | 85 | * | A | 109 | G | 110 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGAG*CG*CAAUU*AG | 3 |
| CAAGAG*CA*UAAAU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGA**AAU* | 3 |
| AAGA**AAA* | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- SAM-I riboswitch junction (4)
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Heat map statistics
- Min 0.18 | Avg 0.19 | Max 0.36
Coloring options: