J4_2YKR_003
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 2YKR|1|A|C|576, 2YKR|1|A|A|815
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2YKR_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.3681
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
2YKR|1|A|G|575
2YKR|1|A|C|576
2YKR|1|A|G|577
*
2YKR|1|A|C|764
2YKR|1|A|G|765
2YKR|1|A|A|766
2YKR|1|A|A|767
2YKR|1|A|A|768
2YKR|1|A|G|769
*
2YKR|1|A|C|810
2YKR|1|A|C|811
2YKR|1|A|G|812
2YKR|1|A|U|813
2YKR|1|A|A|814
2YKR|1|A|A|815
2YKR|1|A|A|816
2YKR|1|A|C|817
2YKR|1|A|G|818
2YKR|1|A|A|819
2YKR|1|A|U|820
2YKR|1|A|G|821
*
2YKR|1|A|C|879
2YKR|1|A|C|880
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain H
- 30S RIBOSOMAL PROTEIN S8
- Chain K
- 30S RIBOSOMAL PROTEIN S11
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain O
- 30S RIBOSOMAL PROTEIN S15
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
- Chain U
- 30S RIBOSOMAL PROTEIN S21
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