J4_2ZJP_001

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJP_001 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0899

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

2ZJP|1|X|C|308
2ZJP|1|X|G|309
2ZJP|1|X|A|310
2ZJP|1|X|A|311
2ZJP|1|X|G|312
*
2ZJP|1|X|C|327
2ZJP|1|X|A|328
2ZJP|1|X|C|329
2ZJP|1|X|C|330
*
2ZJP|1|X|G|334
2ZJP|1|X|A|335
2ZJP|1|X|A|336
*
2ZJP|1|X|U|348
2ZJP|1|X|G|349
2ZJP|1|X|U|350
2ZJP|1|X|A|351
2ZJP|1|X|G|352

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain R

50S RIBOSOMAL PROTEIN L24