J4_2ZJP_002
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAG*CGGAG*CGAGU*GGCGGCAUUAG
- Length
- 25 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2ZJP_002 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.2503
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69347.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
2ZJP|1|X|C|611
2ZJP|1|X|G|612
2ZJP|1|X|A|613
2ZJP|1|X|G|614
*
2ZJP|1|X|C|635
2ZJP|1|X|G|636
2ZJP|1|X|G|637
2ZJP|1|X|A|638
2ZJP|1|X|G|639
*
2ZJP|1|X|C|646
2ZJP|1|X|G|647
2ZJP|1|X|A|648
2ZJP|1|X|G|649
2ZJP|1|X|U|650
*
2ZJP|1|X|G|659
2ZJP|1|X|G|660
2ZJP|1|X|C|661
2ZJP|1|X|G|662
2ZJP|1|X|G|663
2ZJP|1|X|C|664
2ZJP|1|X|A|665
2ZJP|1|X|U|666
2ZJP|1|X|U|667
2ZJP|1|X|A|668
2ZJP|1|X|G|669
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain I
- 50S RIBOSOMAL PROTEIN L15
Coloring options: