J4_2ZJP_009

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJP_009 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.1039

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

2ZJP|1|X|G|2622
2ZJP|1|X|A|2623
2ZJP|1|X|G|2624
2ZJP|1|X|U|2625
*
2ZJP|1|X|A|2653
2ZJP|1|X|A|2654
2ZJP|1|X|C|2655
*
2ZJP|1|X|G|2711
2ZJP|1|X|G|2712
2ZJP|1|X|A|2713
2ZJP|1|X|A|2714
2ZJP|1|X|C|2715
2ZJP|1|X|G|2716
*
2ZJP|1|X|C|2748
2ZJP|1|X|A|2749
2ZJP|1|X|G|2750
2ZJP|1|X|C|2751

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain G

50S RIBOSOMAL PROTEIN L13

Chain H

50S RIBOSOMAL PROTEIN L14