J4_2ZJR_001

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJR_001 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0833

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

2ZJR|1|X|C|308
2ZJR|1|X|G|309
2ZJR|1|X|A|310
2ZJR|1|X|A|311
2ZJR|1|X|G|312
*
2ZJR|1|X|C|327
2ZJR|1|X|A|328
2ZJR|1|X|C|329
2ZJR|1|X|C|330
*
2ZJR|1|X|G|334
2ZJR|1|X|A|335
2ZJR|1|X|A|336
*
2ZJR|1|X|U|348
2ZJR|1|X|G|349
2ZJR|1|X|U|350
2ZJR|1|X|A|351
2ZJR|1|X|G|352

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24