J4_2ZJR_002
3D structure
- PDB id
- 2ZJR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.91 Å
Loop
- Sequence
- CGAG*CGGAG*CGAGU*GGCGGCAUUAG
- Length
- 25 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2ZJR_002 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.2518
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
2ZJR|1|X|C|611
2ZJR|1|X|G|612
2ZJR|1|X|A|613
2ZJR|1|X|G|614
*
2ZJR|1|X|C|635
2ZJR|1|X|G|636
2ZJR|1|X|G|637
2ZJR|1|X|A|638
2ZJR|1|X|G|639
*
2ZJR|1|X|C|646
2ZJR|1|X|G|647
2ZJR|1|X|A|648
2ZJR|1|X|G|649
2ZJR|1|X|U|650
*
2ZJR|1|X|G|659
2ZJR|1|X|G|660
2ZJR|1|X|C|661
2ZJR|1|X|G|662
2ZJR|1|X|G|663
2ZJR|1|X|C|664
2ZJR|1|X|A|665
2ZJR|1|X|U|666
2ZJR|1|X|U|667
2ZJR|1|X|A|668
2ZJR|1|X|G|669
Current chains
- Chain X
- ribosomal 23S RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
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