J4_2ZJR_003

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

2ZJR|1|X|G|1284, 2ZJR|1|X|A|1285, 2ZJR|1|X|U|1286, 2ZJR|1|X|A|1287, 2ZJR|1|X|A|1288, 2ZJR|1|X|C|1663, 2ZJR|1|X|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJR_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.0773

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

2ZJR|1|X|C|1283
2ZJR|1|X|G|1284
2ZJR|1|X|A|1285
2ZJR|1|X|U|1286
2ZJR|1|X|A|1287
2ZJR|1|X|A|1288
2ZJR|1|X|A|1289
*
2ZJR|1|X|U|1307
2ZJR|1|X|C|1308
*
2ZJR|1|X|G|1662
2ZJR|1|X|C|1663
2ZJR|1|X|G|1664
2ZJR|1|X|C|1665
*
2ZJR|1|X|G|1992
2ZJR|1|X|G|1993

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32