J4_2ZJR_005

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UC*GGAAAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

2ZJR|1|X|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJR_005 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.0832

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2ZJR|1|X|U|1326
2ZJR|1|X|C|1327
*
2ZJR|1|X|G|1351
2ZJR|1|X|G|1352
2ZJR|1|X|A|1353
2ZJR|1|X|A|1354
2ZJR|1|X|A|1355
2ZJR|1|X|G|1356
*
2ZJR|1|X|C|1417
2ZJR|1|X|C|1418
*
2ZJR|1|X|G|1613
2ZJR|1|X|C|1614
2ZJR|1|X|C|1615
2ZJR|1|X|C|1616
2ZJR|1|X|G|1617
2ZJR|1|X|U|1618
2ZJR|1|X|A|1619

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain V

50S ribosomal protein L29