J4_2ZJR_007

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJR_007 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0673

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

2ZJR|1|X|G|1763
2ZJR|1|X|A|1764
2ZJR|1|X|C|1765
2ZJR|1|X|U|1766
2ZJR|1|X|G|1767
*
2ZJR|1|X|C|1779
2ZJR|1|X|A|1780
2ZJR|1|X|C|1781
2ZJR|1|X|A|1782
2ZJR|1|X|G|1783
*
2ZJR|1|X|U|1819
2ZJR|1|X|G|1820
2ZJR|1|X|A|1821
2ZJR|1|X|C|1822
*
2ZJR|1|X|G|1958
2ZJR|1|X|U|1959
2ZJR|1|X|A|1960
2ZJR|1|X|A|1961
2ZJR|1|X|C|1962

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2