J4_2ZJR_009

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJR_009 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.0921

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

2ZJR|1|X|G|2622
2ZJR|1|X|A|2623
2ZJR|1|X|G|2624
2ZJR|1|X|U|2625
*
2ZJR|1|X|A|2653
2ZJR|1|X|A|2654
2ZJR|1|X|C|2655
*
2ZJR|1|X|G|2711
2ZJR|1|X|G|2712
2ZJR|1|X|A|2713
2ZJR|1|X|A|2714
2ZJR|1|X|C|2715
2ZJR|1|X|G|2716
*
2ZJR|1|X|C|2748
2ZJR|1|X|A|2749
2ZJR|1|X|G|2750
2ZJR|1|X|C|2751

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14