J4_30RA_004
3D structure
- PDB id
- 30RA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with peptidyl-tRNA, mRNA and Hsp15
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- GUAG*UAC*GGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 30RA|1|Z|U|8, 30RA|1|Z|U|47, 30RA|1|Z|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_30RA_004 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.2508
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 49
Unit IDs
30RA|1|Z|G|7
30RA|1|Z|U|8
30RA|1|Z|A|9
30RA|1|Z|G|10
*
30RA|1|Z|U|25
30RA|1|Z|A|26
30RA|1|Z|C|27
*
30RA|1|Z|G|43
30RA|1|Z|G|44
30RA|1|Z|G|45
30RA|1|Z|G|46
30RA|1|Z|U|47
30RA|1|Z|C|48
30RA|1|Z|G|49
*
30RA|1|Z|U|65
30RA|1|Z|C|66
Current chains
- Chain Z
- tRNA Asp
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Small ribosomal subunit protein uS13
- Chain V
- Heat shock protein 15
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: