J4_3AKZ_004
3D structure
- PDB id
- 3AKZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermotoga maritima nondiscriminating glutamyl-tRNA synthetase in complex with tRNAGln and a glutamyl-AMP analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUCG*CGG*CUGGUG*CC
- Length
- 15 nucleotides
- Bulged bases
- 3AKZ|1|H|U|8, 3AKZ|1|H|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3AKZ_004 not in the Motif Atlas
- Homologous match to J4_5HR6_001
- Geometric discrepancy: 0.177
- The information below is about J4_5HR6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
3AKZ|1|H|G|7
3AKZ|1|H|U|8
3AKZ|1|H|C|9
3AKZ|1|H|G|10
*
3AKZ|1|H|C|25
3AKZ|1|H|G|26
3AKZ|1|H|G|27
*
3AKZ|1|H|C|43
3AKZ|1|H|U|44
3AKZ|1|H|G|45
3AKZ|1|H|G|46
3AKZ|1|H|U|48
3AKZ|1|H|G|49
*
3AKZ|1|H|C|65
3AKZ|1|H|C|66
Current chains
- Chain H
- tRNAGln
Nearby chains
- Chain B
- Glutamyl-tRNA synthetase 2
- Chain D
- Glutamyl-tRNA synthetase 2
- Chain F
- Transfer RNA; tRNA
Coloring options: