3AKZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3AKZ_010 | 1/E/13:22 | tRNA D-loop | ||
| HL_3AKZ_011 | 1/E/31:39 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3AKZ_012 | 1/E/53:61 | T-loop with 2 stacked bulged bases | ||
| HL_3AKZ_001 | 1/F/13:22 | tRNA D-loop | geometric HL_3AL0_001 HL_20811.4 | |
| HL_3AKZ_002 | 1/F/31:39 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3AKZ_003 | 1/F/53:61 | T-loop with 2 stacked bulged bases | geometric HL_4YCO_003 HL_28252.9 | |
| HL_3AKZ_007 | 1/G/13:22 | tRNA D-loop | geometric HL_3AL0_001 HL_20811.4 | |
| HL_3AKZ_008 | 1/G/31:39 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3AKZ_009 | 1/G/53:61 | T-loop with 2 stacked bulged bases | geometric HL_4LCK_003 HL_28252.9 | |
| HL_3AKZ_004 | 1/H/13:22 | tRNA D-loop | geometric HL_3AL0_001 HL_20811.4 | |
| HL_3AKZ_005 | 1/H/31:39 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3AKZ_006 | 1/H/53:61 | T-loop with 2 stacked bulged bases | geometric HL_1U0B_003 HL_28252.9 |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3AKZ_005 | 1/E/7:10, 1/E/25:26, 1/E/44:49, 1/E/65:66 | No text annotation | ||
| J4_3AKZ_002 | 1/F/7:10, 1/F/25:27, 1/F/43:49, 1/F/65:66 | No text annotation | ||
| J4_3AKZ_006 | 1/G/7:10, 1/G/25:26, 1/G/44:49, 1/G/65:66 | No text annotation | ||
| J4_3AKZ_004 | 1/H/7:10, 1/H/25:27, 1/H/43:49, 1/H/65:66 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_3AKZ_001 | No text annotation | ||
| J4_3AKZ_003 | No text annotation |
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