J4_3B0V_001

3D structure

PDB id

3B0V (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.51 Å

Loop

Sequence

GGUAGCU*AGCAUG*CAGUGUCGGC*GCCCC

Length

28 nucleotides

Bulged bases

3B0V|1|B|U|8, 3B0V|1|B|U|47, 3B0V|1|B|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3B0V|1|B|G|6
3B0V|1|B|G|7
3B0V|1|B|U|8
3B0V|1|B|A|9
3B0V|1|B|G|10
3B0V|1|B|C|11
3B0V|1|B|U|12
*
3B0V|1|B|A|23
3B0V|1|B|G|24
3B0V|1|B|C|25
3B0V|1|B|A|26
3B0V|1|B|U|27
3B0V|1|B|G|28
*
3B0V|1|B|C|42
3B0V|1|B|A|43
3B0V|1|B|G|44
3B0V|1|B|U|45
3B0V|1|B|G|46
3B0V|1|B|U|47
3B0V|1|B|C|48
3B0V|1|B|G|49
3B0V|1|B|G|50
3B0V|1|B|C|51
*
3B0V|1|B|G|63
3B0V|1|B|C|64
3B0V|1|B|C|65
3B0V|1|B|C|66
3B0V|1|B|C|67

Current chains

Chain B

tRNA

Nearby chains

Chain D

tRNA-dihydrouridine synthase