J4_3BBX_007

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

3BBX|1|B|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3BBX_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.3432

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3BBX|1|B|C|1833
3BBX|1|B|U|1834
3BBX|1|B|G|1835
*
3BBX|1|B|C|1905
3BBX|1|B|G|1906
*
3BBX|1|B|C|1924
3BBX|1|B|C|1925
3BBX|1|B|U|1926
3BBX|1|B|A|1927
3BBX|1|B|A|1928
3BBX|1|B|G|1929
3BBX|1|B|G|1930
3BBX|1|B|U|1931
3BBX|1|B|A|1932
3BBX|1|B|G|1933
*
3BBX|1|B|C|1967
3BBX|1|B|G|1968
3BBX|1|B|A|1969
3BBX|1|B|A|1970
3BBX|1|B|U|1971
3BBX|1|B|G|1972

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2