J4_3CC2_001

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3CC2|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CC2_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0212

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

3CC2|1|0|C|239
3CC2|1|0|C|240
*
3CC2|1|0|G|379
3CC2|1|0|A|380
3CC2|1|0|G|381
3CC2|1|0|U|382
3CC2|1|0|A|383
3CC2|1|0|G|384
*
3CC2|1|0|C|405
3CC2|1|0|G|406
3CC2|1|0|A|407
3CC2|1|0|A|408
3CC2|1|0|U|409
3CC2|1|0|A|410
3CC2|1|0|A|411
3CC2|1|0|C|412
*
3CC2|1|0|G|428
3CC2|1|0|A|429
3CC2|1|0|A|430
3CC2|1|0|G|431

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S ribosomal protein L15e