J4_3CC2_005

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UC*GGUUAG*CC*GUCCGUA

Length

17 nucleotides

Bulged bases

3CC2|1|0|U|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CC2_005 not in the Motif Atlas

Homologous match to J4_4V9F_005

Geometric discrepancy: 0.0181

The information below is about J4_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3CC2|1|0|U|1419
3CC2|1|0|C|1420
*
3CC2|1|0|G|1444
3CC2|1|0|G|1445
3CC2|1|0|U|1446
3CC2|1|0|U|1447
3CC2|1|0|A|1448
3CC2|1|0|G|1449
*
3CC2|1|0|C|1513
3CC2|1|0|C|1514
*
3CC2|1|0|G|1672
3CC2|1|0|U|1673
3CC2|1|0|C|1674
3CC2|1|0|C|1675
3CC2|1|0|G|1676
3CC2|1|0|U|1677
3CC2|1|0|A|1678

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain P

50S ribosomal protein L19e

Chain S

50S ribosomal protein L23P

Chain V

50S ribosomal protein L29P