J4_3CC2_008

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CC2|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CC2_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.035

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3CC2|1|0|C|1889
3CC2|1|0|U|1890
3CC2|1|0|G|1891
*
3CC2|1|0|C|1946
3CC2|1|0|G|1947
*
3CC2|1|0|C|1965
3CC2|1|0|U|1966
3CC2|1|0|U|1967
3CC2|1|0|A|1968
3CC2|1|0|A|1969
3CC2|1|0|G|1970
3CC2|1|0|G|1971
3CC2|1|0|U|1972
3CC2|1|0|A|1973
3CC2|1|0|G|1974
*
3CC2|1|0|U|2008
3CC2|1|0|G|2009
3CC2|1|0|A|2010
3CC2|1|0|A|2011
3CC2|1|0|U|2012
3CC2|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P