J4_3CC4_001

3D structure

PDB id

3CC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3CC4|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CC4_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0288

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3CC4|1|0|C|239
3CC4|1|0|C|240
*
3CC4|1|0|G|379
3CC4|1|0|A|380
3CC4|1|0|G|381
3CC4|1|0|U|382
3CC4|1|0|A|383
3CC4|1|0|G|384
*
3CC4|1|0|C|405
3CC4|1|0|G|406
3CC4|1|0|A|407
3CC4|1|0|A|408
3CC4|1|0|U|409
3CC4|1|0|A|410
3CC4|1|0|A|411
3CC4|1|0|C|412
*
3CC4|1|0|G|428
3CC4|1|0|A|429
3CC4|1|0|A|430
3CC4|1|0|G|431

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e