J4_3CC4_008

3D structure

PDB id

3CC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CC4|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CC4_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0441

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3CC4|1|0|C|1889
3CC4|1|0|U|1890
3CC4|1|0|G|1891
*
3CC4|1|0|C|1946
3CC4|1|0|G|1947
*
3CC4|1|0|C|1965
3CC4|1|0|U|1966
3CC4|1|0|U|1967
3CC4|1|0|A|1968
3CC4|1|0|A|1969
3CC4|1|0|G|1970
3CC4|1|0|G|1971
3CC4|1|0|U|1972
3CC4|1|0|A|1973
3CC4|1|0|G|1974
*
3CC4|1|0|U|2008
3CC4|1|0|G|2009
3CC4|1|0|A|2010
3CC4|1|0|A|2011
3CC4|1|0|U|2012
3CC4|1|0|G|2013

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P