J4_3CCE_007

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCE_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0355

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

3CCE|1|0|G|1828
3CCE|1|0|A|1829
3CCE|1|0|C|1830
3CCE|1|0|U|1831
3CCE|1|0|G|1832
*
3CCE|1|0|C|1844
3CCE|1|0|A|1845
3CCE|1|0|U|1846
3CCE|1|0|A|1847
3CCE|1|0|G|1848
*
3CCE|1|0|U|1883
3CCE|1|0|G|1884
3CCE|1|0|A|1885
3CCE|1|0|A|1886
3CCE|1|0|U|1887
*
3CCE|1|0|A|2015
3CCE|1|0|U|2016
3CCE|1|0|U|2017
3CCE|1|0|A|2018
3CCE|1|0|A|2019
3CCE|1|0|C|2020

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae