J4_3CCE_008

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CCE|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCE_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0544

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3CCE|1|0|C|1889
3CCE|1|0|U|1890
3CCE|1|0|G|1891
*
3CCE|1|0|C|1946
3CCE|1|0|G|1947
*
3CCE|1|0|C|1965
3CCE|1|0|U|1966
3CCE|1|0|U|1967
3CCE|1|0|A|1968
3CCE|1|0|A|1969
3CCE|1|0|G|1970
3CCE|1|0|G|1971
3CCE|1|0|U|1972
3CCE|1|0|A|1973
3CCE|1|0|G|1974
*
3CCE|1|0|U|2008
3CCE|1|0|G|2009
3CCE|1|0|A|2010
3CCE|1|0|A|2011
3CCE|1|0|U|2012
3CCE|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P