J4_3CCJ_001

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3CCJ|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCJ_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0623

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3CCJ|1|0|C|239
3CCJ|1|0|C|240
*
3CCJ|1|0|G|379
3CCJ|1|0|A|380
3CCJ|1|0|G|381
3CCJ|1|0|U|382
3CCJ|1|0|A|383
3CCJ|1|0|G|384
*
3CCJ|1|0|C|405
3CCJ|1|0|G|406
3CCJ|1|0|A|407
3CCJ|1|0|A|408
3CCJ|1|0|U|409
3CCJ|1|0|A|410
3CCJ|1|0|A|411
3CCJ|1|0|C|412
*
3CCJ|1|0|G|428
3CCJ|1|0|A|429
3CCJ|1|0|A|430
3CCJ|1|0|G|431

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S ribosomal protein L15e