J4_3CCL_008

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CCL|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCL_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0427

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3CCL|1|0|C|1889
3CCL|1|0|U|1890
3CCL|1|0|G|1891
*
3CCL|1|0|C|1946
3CCL|1|0|G|1947
*
3CCL|1|0|C|1965
3CCL|1|0|U|1966
3CCL|1|0|U|1967
3CCL|1|0|A|1968
3CCL|1|0|A|1969
3CCL|1|0|G|1970
3CCL|1|0|G|1971
3CCL|1|0|U|1972
3CCL|1|0|A|1973
3CCL|1|0|G|1974
*
3CCL|1|0|U|2008
3CCL|1|0|G|2009
3CCL|1|0|A|2010
3CCL|1|0|A|2011
3CCL|1|0|U|2012
3CCL|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P