J4_3CCQ_008

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CCQ|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCQ_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0466

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3CCQ|1|0|C|1889
3CCQ|1|0|U|1890
3CCQ|1|0|G|1891
*
3CCQ|1|0|C|1946
3CCQ|1|0|G|1947
*
3CCQ|1|0|C|1965
3CCQ|1|0|U|1966
3CCQ|1|0|U|1967
3CCQ|1|0|A|1968
3CCQ|1|0|A|1969
3CCQ|1|0|G|1970
3CCQ|1|0|G|1971
3CCQ|1|0|U|1972
3CCQ|1|0|A|1973
3CCQ|1|0|G|1974
*
3CCQ|1|0|U|2008
3CCQ|1|0|G|2009
3CCQ|1|0|A|2010
3CCQ|1|0|A|2011
3CCQ|1|0|U|2012
3CCQ|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P