J4_3CCR_008

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3CCR|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCR_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0638

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

3CCR|1|0|C|1889
3CCR|1|0|U|1890
3CCR|1|0|G|1891
*
3CCR|1|0|C|1946
3CCR|1|0|G|1947
*
3CCR|1|0|C|1965
3CCR|1|0|U|1966
3CCR|1|0|U|1967
3CCR|1|0|A|1968
3CCR|1|0|A|1969
3CCR|1|0|G|1970
3CCR|1|0|G|1971
3CCR|1|0|U|1972
3CCR|1|0|A|1973
3CCR|1|0|G|1974
*
3CCR|1|0|U|2008
3CCR|1|0|G|2009
3CCR|1|0|A|2010
3CCR|1|0|A|2011
3CCR|1|0|U|2012
3CCR|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P