J4_3CCV_001

3D structure

PDB id

3CCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3CCV|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCV_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0344

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3CCV|1|0|C|239
3CCV|1|0|C|240
*
3CCV|1|0|G|379
3CCV|1|0|A|380
3CCV|1|0|G|381
3CCV|1|0|U|382
3CCV|1|0|A|383
3CCV|1|0|G|384
*
3CCV|1|0|C|405
3CCV|1|0|G|406
3CCV|1|0|A|407
3CCV|1|0|A|408
3CCV|1|0|U|409
3CCV|1|0|A|410
3CCV|1|0|A|411
3CCV|1|0|C|412
*
3CCV|1|0|G|428
3CCV|1|0|A|429
3CCV|1|0|A|430
3CCV|1|0|G|431

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S ribosomal protein L15e